PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17453.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 212aa    MW: 23941.5 Da    PI: 5.2695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17453.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-181665255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +gr++AeIrdp++   + r++lg+f+t eeAa a+++a+++++g
  Rsa1.0_17453.1_g00001.1 16 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTGEEAALAYDRAARSMRG 65
                             678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.90E-301572No hitNo description
PROSITE profilePS5103220.4291673IPR001471AP2/ERF domain
SMARTSM003801.1E-321679IPR001471AP2/ERF domain
PRINTSPR003678.1E-81728IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-201774IPR016177DNA-binding domain
PfamPF008473.5E-121765IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-281773IPR001471AP2/ERF domain
PRINTSPR003678.1E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNTSKTKKKQ EEVGTRFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTGE EAALAYDRAA  60
RSMRGTRART NFVYSDMPHS SSVTSIVSPD EPPPPPPPVA APTCSDDHVD YMMMFNQYLS  120
TDSPMLQPQS DQVENSYMFG GSPSCYSINS CELPPLPSDL SSSCYSQPQW NVEDYSSANY  180
FEGEYVHSPM FSRMPSVSES LPHGFNHFGF YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201472362ATERF1
3gcc_A2e-201472362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892120.0AC189212.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131367.11e-127PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6442e-96LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLM4CPT31e-127M4CPT3_BRARP; Uncharacterized protein
STRINGBra006222.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-90ERF family protein